[Smeagol-discuss] problem about the parallel using openmpi-1.2.6 and ifort
张广平
284107217 at qq.com
Tue Jan 5 14:12:32 GMT 2010
Dear smeaol user:
Now I use openmpi-1.2.6,mkl-10.0.2.018,ifort-10.1.012 to make my parallel smeagol,the compile is no problem,but when i use it in parallel mode using the command:
mpiexec -n 8 smeagolpara <Auwire.fdf > mx.log &
problems appear：
---------------------------------------------------------------
[1] 32513
[zgp at localhost mx]$ [localhost:32523] *** Process received signal ***
[localhost:32523] Signal: Segmentation fault (11)
[localhost:32523] Signal code: Address not mapped (1)
[localhost:32523] Failing at address: 0xfc
[localhost:32523] [ 0] /lib64/libpthread.so.0 [0x393160e7c0]
[localhost:32523] [ 1] smeagolpara(extrapol_+0x15c) [0x5304d0]
[localhost:32523] [ 2] smeagolpara(MAIN__+0xe650) [0x5ee570]
[localhost:32523] [ 3] smeagolpara(main+0x2a) [0x43f2c2]
[localhost:32523] [ 4] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3930a1d994]
[localhost:32523] [ 5] smeagolpara [0x43f1e9]
[localhost:32523] *** End of error message ***
[localhost:32521] *** Process received signal ***
[localhost:32521] Signal: Segmentation fault (11)
[localhost:32521] Signal code: Address not mapped (1)
[localhost:32521] Failing at address: 0xfc
[localhost:32521] [ 0] /lib64/libpthread.so.0 [0x393160e7c0]
[localhost:32521] [ 1] smeagolpara(extrapol_+0x15c) [0x5304d0]
[localhost:32521] [ 2] smeagolpara(MAIN__+0xe650) [0x5ee570]
[localhost:32521] [ 3] smeagolpara(main+0x2a) [0x43f2c2]
[localhost:32521] [ 4] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3930a1d994]
[localhost:32521] [ 5] smeagolpara [0x43f1e9]
[localhost:32521] *** End of error message ***
[localhost:32522] *** Process received signal ***
[localhost:32522] Signal: Segmentation fault (11)
[localhost:32522] Signal code: Address not mapped (1)
[localhost:32522] Failing at address: 0xfc
[localhost:32522] [ 0] /lib64/libpthread.so.0 [0x393160e7c0]
[localhost:32522] [ 1] smeagolpara(extrapol_+0x15c) [0x5304d0]
[localhost:32522] [ 2] smeagolpara(MAIN__+0xe650) [0x5ee570]
[localhost:32522] [ 3] smeagolpara(main+0x2a) [0x43f2c2]
[localhost:32522] [ 4] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3930a1d994]
[localhost:32522] [ 5] smeagolpara [0x43f1e9]
[localhost:32522] *** End of error message ***
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
mca_btl_sm.so 00002AED7B363A0C Unknown Unknown Unknown
mca_bml_r2.so 00002AED7AF5804A Unknown Unknown Unknown
libopen-pal.so.0 00002AED75AC39BA Unknown Unknown Unknown
libmpi.so.0 00002AED755FDE25 Unknown Unknown Unknown
mca_coll_tuned.so 00002AED7BD8803A Unknown Unknown Unknown
libmpi.so.0 00002AED75610857 Unknown Unknown Unknown
libmpi_f77.so.0 00002AED753B67A5 Unknown Unknown Unknown
smeagolpara 00000000006E3E0E Unknown Unknown Unknown
smeagolpara 00000000005EE919 Unknown Unknown Unknown
smeagolpara 000000000043F2C2 Unknown Unknown Unknown
libc.so.6 0000003930A1D994 Unknown Unknown Unknown
smeagolpara 000000000043F1E9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
libpthread.so.0 000000393160D610 Unknown Unknown Unknown
mca_oob_tcp.so 00002AB23DF65BFF Unknown Unknown Unknown
mca_oob_tcp.so 00002AB23DF64996 Unknown Unknown Unknown
mca_oob_tcp.so 00002AB23DF64A65 Unknown Unknown Unknown
mca_oob_tcp.so 00002AB23DF66928 Unknown Unknown Unknown
libopen-pal.so.0 00002AB23C36DB97 Unknown Unknown Unknown
libopen-pal.so.0 00002AB23C3689FB Unknown Unknown Unknown
libmpi.so.0 00002AB23BEA2E25 Unknown Unknown Unknown
mca_coll_tuned.so 00002AB24262D03A Unknown Unknown Unknown
libmpi.so.0 00002AB23BEB5857 Unknown Unknown Unknown
libmpi_f77.so.0 00002AB23BC5B7A5 Unknown Unknown Unknown
smeagolpara 00000000006E3E0E Unknown Unknown Unknown
smeagolpara 00000000005EE919 Unknown Unknown Unknown
smeagolpara 000000000043F2C2 Unknown Unknown Unknown
libc.so.6 0000003930A1D994 Unknown Unknown Unknown
smeagolpara 000000000043F1E9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
mca_btl_sm.so 00002B5424E78A10 Unknown Unknown Unknown
mca_bml_r2.so 00002B5424A6D04A Unknown Unknown Unknown
libopen-pal.so.0 00002B541F5D89BA Unknown Unknown Unknown
libmpi.so.0 00002B541F112E25 Unknown Unknown Unknown
mca_coll_tuned.so 00002B542589D03A Unknown Unknown Unknown
libmpi.so.0 00002B541F125857 Unknown Unknown Unknown
libmpi_f77.so.0 00002B541EECB7A5 Unknown Unknown Unknown
smeagolpara 00000000006E3E0E Unknown Unknown Unknown
smeagolpara 00000000005EE919 Unknown Unknown Unknown
smeagolpara 000000000043F2C2 Unknown Unknown Unknown
libc.so.6 0000003930A1D994 Unknown Unknown Unknown
smeagolpara 000000000043F1E9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
mca_btl_sm.so 00002AEBDD3B1A0C Unknown Unknown Unknown
mca_bml_r2.so 00002AEBDCFA604A Unknown Unknown Unknown
libopen-pal.so.0 00002AEBD7B119BA Unknown Unknown Unknown
libmpi.so.0 00002AEBD764BE25 Unknown Unknown Unknown
mca_coll_tuned.so 00002AEBDDDD603A Unknown Unknown Unknown
libmpi.so.0 00002AEBD765E857 Unknown Unknown Unknown
libmpi_f77.so.0 00002AEBD74047A5 Unknown Unknown Unknown
smeagolpara 00000000006E3E0E Unknown Unknown Unknown
smeagolpara 00000000005EE919 Unknown Unknown Unknown
smeagolpara 000000000043F2C2 Unknown Unknown Unknown
libc.so.6 0000003930A1D994 Unknown Unknown Unknown
smeagolpara 000000000043F1E9 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
mca_btl_sm.so 00002B956A9F29F4 Unknown Unknown Unknown
mca_bml_r2.so 00002B956A5E704A Unknown Unknown Unknown
libopen-pal.so.0 00002B95651529BA Unknown Unknown Unknown
libmpi.so.0 00002B9564C8CE25 Unknown Unknown Unknown
mca_coll_tuned.so 00002B956B41703A Unknown Unknown Unknown
libmpi.so.0 00002B9564C9F857 Unknown Unknown Unknown
libmpi_f77.so.0 00002B9564A457A5 Unknown Unknown Unknown
smeagolpara 00000000006E3E0E Unknown Unknown Unknown
smeagolpara 00000000005EE919 Unknown Unknown Unknown
smeagolpara 000000000043F2C2 Unknown Unknown Unknown
libc.so.6 0000003930A1D994 Unknown Unknown Unknown
smeagolpara 000000000043F1E9 Unknown Unknown Unknown
mpiexec noticed that job rank 5 with PID 32521 on node localhost exited on signal 11 (Segmentation fault).
-------------------------------------------------------------------
Can't I use openmpi ? when I use the parallel as serial using command:smeagolpara <Auwire.fdf > mx.log &
it is OK!
Can any one help me ?
Any advice is welcome!
BEST REGARDS!
Guangping Zhang
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